How COVID-19 Affects the Brain

Neuroscience and Psychiatry

How COVID-19 Affects the Brain

Maura Boldrini, MD, PhD; Peter D. Canoll, MD, PhD; Robyn S. Klein, MD, PhD

COVID-19 has resulted in more than 120 million cases and 2.6 mil- lion deaths to date. Respiratory and gastrointestinal symptoms are accompanied by short- and long-term neuropsychiatric symptoms (NPs) and long-term brain sequelae.

Some patients present with anosmia, cognitive and attention deficits (ie, brain fog), new-onset anxiety, depression, psychosis, sei- zures, and even suicidal behavior.1,2 These present before, during, and after respiratory symptoms and are unrelated to respiratory insufficiency,1 suggesting independent brain damage. Follow-ups conducted in Germany and the United Kingdom found post– COVID-19 NPs in 20% to 70% of patients, even in young adults, and lasting months after respiratory symptoms resolved,1 suggesting brain involvement persists.

Entering through angiotensin-converting enzyme 2 receptors,2 SARS-CoV-2 can damage endothelial cells leading to inflammation, thrombi, and brain damage. Moreover, systemic inflammation leads to decreased monoamines and trophic factors and activation of mi- croglia, resulting in increased glutamate and N-methyl-D-aspartate (NMDA)3 and excitotoxicity (Figure). These insults induce new- onset or re-exacerbation of preexisting NPs.

Does the Virus Invade the Brain?

SARS-CoV-2 is known to penetrate the olfactory mucosa, causing loss of smell, and may enter the brain, migrating from the cribriform plate

along the olfactory tract2 or through vagal or trigeminal pathways; however, definitive evidence for this is lacking. SARS-CoV-2 could pass the blood-brain barrier (BBB) because inflammatory cyto- kines induce BBB instability or via monocytes.4 It could reach brain tissue via circumventricular organs (CVOs), midline structures around the third and fourth ventricles, that monitor blood and cerebral spi- nal fluid content via fenestrated capillaries lacking the junctional pro- teins expressed in the BBB. Viral RNA was detected by reverse tran- scription–quantitative real-time polymerase chain reaction but not by in situ hybridization in medulla and cerebellum,2 located next to the area postrema, a CVO that controls emetic responses to toxins. SARS-CoV-2 protein has been found in brain vascular endothelium but not in neurons or glia.2 Thus, detected viral RNA may represent contamination by vasculature in leptomeninges and Virchow- Robin spaces. Histopathologic analysis of whole human brain showed microglial nodules and phagocytosis of neurons (neuronophagia) in brain stem and less frequently in cortex and limbic structures, as- sociated with sparse lymphocytic infiltration, and no correlations be- tween histopathologic findings and levels of viral messenger RNA in the same brain.5 While ageusia, nausea, and vomiting may be re- lated to CVO and brain stem viral invasion, other short-term and long- lasting NPs are more likely due to neuroinflammation and hypoxic injury. Brain stem involvement may explain persistent autonomic abnormalities and anxiety.

A, SARS-CoV-2 invades endothelial cells via transmembrane angiotensin- converting enzyme 2 (ACE2) receptor, enabled by transmembrane protease, serine 2 (TMPRSS2). B, Cytokine elevation and microglia activation result in increased kynurenine, quinolinic acid, and glutamate, and neurotransmitter depletion. C, Coagulation cascade and elevation of von Willebrand factor (vWF)

lead to thrombotic events. D, Altered neurotransmission, excitotoxicity by increased glutamate, and hypoxic injury contribute to neuronal dysfunction and loss. E, Neuropsychiatric symptoms differ depending on the Brodmann area involved. IL indicates interleukin; NMDA, N-methyl-D-aspartate; TNF, tumor necrosis factor.

Clinical Review & Education

Figure. Brain Vascular Injury, Neurotransmitter System Dysfunction, Thrombotic Events, Neuronal Damage, and Neuropsychiatric Symptoms


A SARS-CoV-2 entry into brain capillary endothelial cells

Endothelial damage




Microthrombus formation

Increased vWF Fibrin deposition Platelet activation

Microthrombus Coagulation cascade



Synaptic pruning




Cytokine storm

IL-1ß IL-10

D Altered neurotransmission and neuronal damage


Excitotoxicity Hypoxic injury




TNF-α Astrocyte

Local microglia activation


Increased kynurenine production

Increased quinolinic acid

Increased glutamate Upregulation of NMDA receptors

Depletion of neurotransmitters

Serotonin, dopamine, norepinephrine


Neuropsychiatric symptoms (dependant on Brodmann areas involved)



• Attention deficits • Cognitive deficits • New-onset anxiety • Suicidal behavior

• Depression • Psychosis • Seizures

(Reprinted) JAMA Psychiatry Published online March 26, 2021 E1 © 2021 American Medical Association. All rights reserved.

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Clinical Review & Education Neuroscience and Psychiatry

Cytokines and Microglia Activation Lead to Neurotoxicity

Patients with severe COVID-19 infection have been reported to ex- perience a severe cytokine storm, with increased serum levels of pro- inflammatory cytokines including interleukin (IL) 1, IL-6, IL-10, and tumor necrosis factor (TNF)-α. TNF-α can directly cross the BBB by transport (increased BBB permeability due to cytokine-induced damage)4 or CVOs. Once across the BBB, cytokines activate microg- lia and astrocytes.6 In addition to phagocytosing damaged cells, activated microglia secrete inflammatory mediators, including glu- tamate, quinolinic acid, ILs, complement proteins, and TNF-α.7 In- creased quinolinic acid results in higher glutamate and upregula- tion of NMDA receptors, possibly inducing altered learning, memory, neuroplasticity, hallucinations, and nightmares. Excitotoxicity and neuronal loss result in region- and neurotransmitter-specific NPs.

Inflammation and NPs

Increased inflammation activates the enzyme indoleamine dioxygen- ase, which metabolizes tryptophan to kynurenine rather than serotonin.3 Reduced neurotransmitter release was demonstrated in patients treated with interferon alfa who exhibited increased posi- tron emission tomography fluorodopa 18F uptake and decreased turn- over in caudate and putamen, which correlated with depression and fatigue severity. Similarly, interferon- or IL-based immunotherapy can induce depression. Inflammation leads to blunted monoamine neurotransmission, anhedonia, negative cognitive, psychomotor and neurovegetative symptoms, depression, and suicidal behavior, which poorly respond to conventional antidepressants.3 In individuals who attempt suicide and have major depressive disorder, studies found elevated plasma kynurenine, high IL-1 and IL-6 levels in blood, cere- bral spinal fluid, and brain, and increased serum C-reactive protein cor- relating with brain glutamate levels. TNF-α and IL-6 levels may pre- dict negative and depressive symptoms in people at risk of psychosis, and higher IL-6 correlates with smaller hippocampus volume. El- evated IL-1β signaling decreases hippocampal neurogenesis and

increases apoptosis in mammals. Suicide decedents with major de- pressive disorder have increased proinflammatory and decreased neu- rogenesis markers in postmortem hippocampus,8 together with smaller dentate gyrus, fewer granule neurons, and neural progenitor cells.9 Therefore, neuroinflammation may contribute to the patho- genesis of NPs reducing neurotransmitters and neurotrophins and increasing excitotoxicity.3

Interplay of Inflammation and Coagulation

Virus entrance into endothelial cells of brain vasculature activates neutrophils, macrophages, thrombin production, and comple- ment pathways, promoting microthrombi deposition.2 COVID-19 brain damage shows macro– and micro–hypoxic/ischemic injury and infarcts at autopsy.5 Moreover, the complement cascade mediates synaptic pruning by microglia following viral infections.7 There- fore, NPs of COVID-19 could result from microstrokes and neuronal damage, and symptoms consequently differ depending on the brain region involved. Mechanisms of COVID-19 brain damage may re- semble those involved in traumatic brain injury, where a combina- tion of proinflammatory status and microvascular injury resulting in neuronal loss have been implicated in the pathogenesis of suicidal behavior.10 Conversely, a successful clinical outcome would result from an initial immune response involving toll receptors and blunted nonpriming or low-priming delayed inflammation.

Understanding cellular and molecular aspects of COVID-19 brain damage could direct interventions to reduce long-term NPs. Inter- ventions may involve antagonists of cytokines (etanercept, inflixi- mab), NMDA receptor (ketamine), TNF-α and anti-inflammatory pathways (aspirin, celecoxib), and kynurenine pathway modula- tors (minocycline).3 Mitigating long-term post–COVID-19 cogni- tive, emotional, and behavioral sequelae would decrease disease bur- den. COVID-19 neuropathology may serve as a model for deciphering neurodegenerative processes related to neuroinflammation in other brain diseases and developing new treatment strategies.


Author Affiliations: Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute, New York (Boldrini); Department of Psychiatry, Columbia University, New York,

New York (Boldrini); Department of Pathology and Cell Biology, Columbia University, New York, New York (Canoll); Department of Medicine, Washington University School of Medicine in

St Louis, St Louis, Missouri (Klein); Department of Neuroscience, Washington University School of Medicine in St Louis, St Louis, Missouri (Klein); Department of Pathology & Immunology, Washington University School of Medicine in

St Louis, St Louis, Missouri (Klein).

Corresponding Author: Maura Boldrini, MD, PhD, Department of Psychiatry, New York State Psychiatric Institute, Columbia University
Irving Medical Center, 1051 Riverside Dr,

Unit 42, New York, NY 10032 (

Published Online: March 26, 2021. doi:10.1001/jamapsychiatry.2021.0500

Conflict of Interest Disclosures: Dr Boldrini is supported by the National Institutes of Health,
the American Foundation for Suicide Prevention, Dr Brigitt Rok Foundation, and the Morris Stroud III

Center for Study of Quality of Life in Health and Aging at Columbia University. Drs Canoll and Klein are supported by the National Institutes of Health.

Additional Contributions: We thank Helen Blair Simpson, MD, PhD (New York State Psychiatric Institute and Columbia University), for reviewing a draft of this work. Dr Simpson was not compensated.


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E2 JAMA Psychiatry Published online March 26, 2021
© 2021 American Medical Association. All rights reserved.


Downloaded From: on 05/27/2021

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